The ProteinCartography↗ pipeline searches sequence and structure databases for matches to input proteins and builds structural comparison maps of protein space for the purposes of discovery and exploration
Here's a list of 90 Uniprot↗ proteins that have been run through the pipeline. This is a resource we're presenting to the community to demonstrate the capabilities of the pipeline and to provide a starting point for further exploration. From the table below, click on a protein to view its map.
Read more about the pipeline on PubPub↗ or checkout the code on our GitHub repo↗.
| Protein ID | Protein Name | Status | View |
|---|---|---|---|
Q9UM73
| ALK tyrosine kinase receptor | Done | |
P43235
| Cathepsin K | Done | |
P00374
| Dihydrofolate reductase | Done | |
P49841
| Glycogen synthase kinase-3 beta | Done | |
P68871
| Hemoglobin subunit beta | Done | |
P01834
| Immunoglobulin kappa constant | Done | |
P53779
| Mitogen-activated protein kinase 10 | Done | |
Q99497
| Parkinson disease protein 7 | Done | |
Q13451
| Peptidyl-prolyl cis-trans isomerase FKBP5 | Done | |
O75530
| Polycomb protein EED | Done | |
P19793
| Retinoic acid receptor RXR-alpha | Done | |
P00441
| Superoxide dismutase [Cu-Zn] | Done | |
P40337
| von Hippel-Lindau disease tumor suppressor | Done | |
Q93009
| Ubiquitin carboxyl-terminal hydrolase 7 | Done | |
Q13153
| Serine/threonine-protein kinase PAK 1 | Done | |
Q8MML5
| Paxillin-B | Done | |
Q15942
| Zyxin | Done | |
Q92581
| Sodium/hydrogen exchanger 6 | Done | |
P53350
| Serine/threonine-protein kinase PLK1 | Done | |
P16070
| CD44 antigen | Done | |
P52272
| Heterogeneous nuclear ribonucleoprotein M | Done | |
Q92819
| Hyaluronan synthase 2 | Done | |
P33176
| Kinesin-1 heavy chain | Done | |
P02452
| Collagen alpha-1(I) chain | Done | |
P37840
| Alpha-synuclein | Done | |
P07737
| Profilin-1 | Done | |
O94811
| Tubulin polymerization-promoting protein | Done | |
P42212
| Green fluorescent protein | Done | |
P01584
| Interleukin-1 beta | Done | |
O14828
| Secretory carrier-associated membrane protein 3 | Done | |
P04637
| Cellular tumor antigen p53 | Done | |
P49450
| Histone H3-like centromeric protein A | Done | |
Q13148
| TAR DNA-binding protein 43 | Done | |
O14524
| Nuclear envelope integral membrane protein 1 | Done | |
P08670
| Vimentin | Done | |
P50570
| Dynamin-2 | Done | |
P37198
| Nuclear pore glycoprotein p62 | Done | |
Q9UH99
| SUN domain-containing protein 2 | Done | |
P63167
| Dynein light chain 1, cytoplasmic | Done | |
P56704
| Protein Wnt-3a | Done | |
P20700
| Lamin-B1 | Done | |
P84077
| ADP-ribosylation factor 1 | Done | |
P60953
| Cell division control protein 42 homolog | Done | |
P61586
| Transforming protein RhoA | Done | |
P62491
| Ras-related protein Rab-11A | Done | |
Q9BZG1
| Ras-related protein Rab-34 | Done | |
O14965
| Aurora kinase A | Done | |
Q71U36
| Tubulin alpha-1A chain | Done | |
P12931
| Proto-oncogene tyrosine-protein kinase Src | Done | |
Q9GT24
| Probable serine/threonine-protein kinase zyg-1 | Done | |
P12830
| Cadherin-1 | Done | |
P60709
| Actin, cytoplasmic 1 | Done | |
O13310
| Serine/threonine-protein kinase orb6 | Done | |
O00444
| Serine/threonine-protein kinase PLK4 | Done | |
P43034
| Platelet-activating factor acetylhydrolase IB subunit beta | Done | |
P19484
| Transcription factor EB | Done | |
Q9C026
| E3 ubiquitin-protein ligase TRIM9 | Done | |
P40763
| Signal transducer and activator of transcription 3 | Done | |
Q14141
| Septin-6 | Done | |
Q01518
| Adenylyl cyclase-associated protein 1 | Done | |
P05106
| Integrin beta-3 | Done | |
P06493
| Cyclin-dependent kinase 1 | Done | |
Q8T0S6
| Serine/threonine-protein kinase hippo | Done | |
P23945
| Follicle-stimulating hormone receptor | Done | |
Q9UBF8
| Phosphatidylinositol 4-kinase beta | Done | |
P0DMV8
| Heat shock 70 kDa protein 1A | Done | |
Q96RI1
| Bile acid receptor | Done | |
P08603
| Complement factor H | Done | |
P98170
| E3 ubiquitin-protein ligase XIAP | Done | |
P01112
| GTPase HRas | Done | |
P04439
| HLA class I histocompatibility antigen, A alpha chain | Done | |
P14174
| Macrophage migration inhibitory factor | Done | |
Q15596
| Nuclear receptor coactivator 2 | Done | |
P62937
| Peptidyl-prolyl cis-trans isomerase A | Done | |
P27986
| Phosphatidylinositol 3-kinase regulatory subunit alpha | Done | |
P28074
| Proteasome subunit beta type-5 | Done | |
P50120
| Retinol-binding protein 2 | Done | |
G3ECR1
| CRISPR-associated endonuclease Cas9 | Done | |
Q00610
| Clathrin heavy chain 1 | Done | |
P12883
| Myosin-7 | Done | |
Q13464
| Rho-associated protein kinase 1 | Done | |
Q05397
| Focal adhesion kinase 1 | Done | |
P19838
| Nuclear factor NF-kappa-B p105 subunit | Done | |
P50552
| Vasodilator-stimulated phosphoprotein | Done | |
Q9NQW6
| Anillin | Done | |
P18206
| Vinculin | Done | |
Q9BYB0
| SH3 and multiple ankyrin repeat domains protein 3 | Done | |
P51140
| Segment polarity protein dishevelled | Done | |
Q08345
| Epithelial discoidin domain-containing receptor 1 | Done | |
O60610
| Protein diaphanous homolog 1 | Done |